IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_CDS.nexus --scf 100 --prefix concord -T 2
Seed:    454348 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 11:13:22 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_CDS.nexus ... Nexus format detected
Alignment has 26 sequences with 136821 columns, 61245 distinct patterns
136619 parsimony-informative, 0 singleton sites, 202 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    2.24%    failed      0.00%
   2  AldGig    1.89%    failed      0.00%
   3  ApaSpi    1.49%    passed     12.49%
   4  BatTri   49.79%    passed     38.19%
   5  CarIns    3.76%    passed     54.99%
   6  CheAbi    7.77%    failed      0.00%
   7  CheMyd    0.60%    passed     41.74%
   8  CheSer    3.93%    failed      0.00%
   9  ChrPic    1.11%    failed      2.35%
  10  CuoAmb    3.42%    passed     22.04%
  11  CuoMcc    1.11%    failed      0.53%
  12  DerCor    0.89%    failed      0.00%
  13  DerMaw    2.42%    failed      0.01%
  14  EmyOrb   42.83%    failed      0.00%
  15  EmySub    1.71%    passed     38.99%
  16  GopAga    0.65%    failed      0.00%
  17  MalTer    8.15%    failed      4.97%
  18  MauRee    0.50%    failed      0.53%
  19  MesTub    3.49%    failed      4.70%
  20  PelCas    2.46%    failed      0.00%
  21  PelSin    1.61%    failed      0.00%
  22  PlaMeg    0.74%    failed      0.00%
  23  PodExp    4.51%    failed      0.00%
  24  SteCar    3.11%    failed      0.00%
  25  TerCar    2.32%    failed      0.00%
  26  TraScr    0.93%    failed      0.30%
****  TOTAL     5.90%  20 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
1.765 sec
Tree with concordance factors written to concord.cf.tree
Annotated tree (best viewed in FigTree) written to concord.cf.tree.nex
Tree with branch IDs written to concord.cf.branch
Concordance factors per branch printed to concord.cf.stat
Date and Time: Mon May  3 11:13:25 2021
